ARDENT
1.0.3
Contents:
Install
Install the released version
Python package dependencies
Hardware requirements
Testing
Tutorial
Imports
Load data
Preprocess raw image
Downsample data
Preprocess downsampled image
Orient data
Visualize data orientation as loaded.
Reorient target and revisualize
Use reoriented target & target_resolution
Parameter tune
Perform registration
Apply registration
Visualize results
Reference
transform
io
visualization
preprocessing
preprocessing pipeline
resampling
normalization
presets
registration_parameters
batch_preprocessing
License
Useful Links
ARDENT @ GitHub
ARDENT @ PyPI
ARDENT
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Index
Index
A
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B
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C
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G
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H
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L
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N
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P
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R
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S
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T
A
ardent.preprocessing.normalization (module)
ardent.preprocessing.resampling (module)
ardent.presets.batch_preprocessing (module)
ardent.presets.registration_parameters (module)
ardent.transform (module)
ardent.visualization (module)
B
basic_preprocessing() (in module ardent.presets.batch_preprocessing)
basic_preprocessing_with_pad() (in module ardent.presets.batch_preprocessing)
C
cast_to_typed_array() (in module ardent.preprocessing.normalization)
center_to_mean() (in module ardent.preprocessing.normalization)
continue_registration() (ardent.transform.Transform method)
G
get_lddmm_dict() (ardent.transform.Transform method)
get_registration_preset() (in module ardent.presets.registration_parameters)
get_registration_presets() (in module ardent.presets.registration_parameters)
H
heatslices() (in module ardent.visualization)
L
load() (ardent.transform.Transform method)
N
normalize_by_MAD() (in module ardent.preprocessing.normalization)
P
pad() (in module ardent.preprocessing.normalization)
preprocess() (in module ardent.preprocessing.__init__)
R
register() (ardent.transform.Transform method)
S
save() (ardent.transform.Transform method)
T
Transform (class in ardent.transform)
transform_image() (ardent.transform.Transform method)
transform_points() (ardent.transform.Transform method)